No. words: 1384; after pruning: 1330


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 3.6 (1,1:559)  412  7.90 0.54 0.00  MoSU034F_A01_BE446359Tu01P018A01P018A071F1_015.ab1        1   557 (135)  C MoSU034R_A01_BE446359Tu01P018A01P018A071R1_015.ab1   (132)   560     1 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  176 nodes

 90 str. conn. components

Path
    1  C MoSU034R_A01_BE446359Tu01P018A01P018A071R1_015.ab1   692 
  148    MoSU034F_A01_BE446359Tu01P018A01P018A071F1_015.ab1    16 
  172  C MoSU034R_A01_BE446359Tu01P018A01P018A071R1_015.ab1   521 
  176    MoSU034F_A01_BE446359Tu01P018A01P018A071F1_015.ab1    44 
  200  C MoSU034R_A01_BE446359Tu01P018A01P018A071R1_015.ab1   493 
  210    MoSU034F_A01_BE446359Tu01P018A01P018A071F1_015.ab1    78 
  214  C MoSU034R_A01_BE446359Tu01P018A01P018A071R1_015.ab1   479 
  251    MoSU034F_A01_BE446359Tu01P018A01P018A071F1_015.ab1   119 
  265  C MoSU034R_A01_BE446359Tu01P018A01P018A071R1_015.ab1   428 
  269    MoSU034F_A01_BE446359Tu01P018A01P018A071F1_015.ab1   137 
  289  C MoSU034R_A01_BE446359Tu01P018A01P018A071R1_015.ab1   404 
  301    MoSU034F_A01_BE446359Tu01P018A01P018A071F1_015.ab1   169 
  329  C MoSU034R_A01_BE446359Tu01P018A01P018A071R1_015.ab1   364 
  333    MoSU034F_A01_BE446359Tu01P018A01P018A071F1_015.ab1   201 
Contig length: old 824, new 824

Contig length: old 824, new 824
New start: 0 
S Change at: 261; seg lengths: entry 1, contig 1
S Change at: 455; seg lengths: entry 1, contig 1
S Change at: 712; seg lengths: entry 1, contig 1