No. words: 1229; after pruning: 1203


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 6.1 (1,1:662)  380  1.45 0.00 0.00  MoSU002F_D12_BE446380Ld04P005G05G111F2_094.ab1      249   663 (151)  C MoSU002R_D12_BE446380Ld04P005G05G111R2_094.ab1   (0)   415     1 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  200 nodes

 102 str. conn. components

Path
    1    MoSU002F_D12_BE446380Ld04P005G05G111F2_094.ab1     1 
  320  C MoSU002R_D12_BE446380Ld04P005G05G111R2_094.ab1   344 
  324    MoSU002F_D12_BE446380Ld04P005G05G111F2_094.ab1   324 
  332  C MoSU002R_D12_BE446380Ld04P005G05G111R2_094.ab1   332 
  336    MoSU002F_D12_BE446380Ld04P005G05G111F2_094.ab1   336 
  344  C MoSU002R_D12_BE446380Ld04P005G05G111R2_094.ab1   320 
  368    MoSU002F_D12_BE446380Ld04P005G05G111F2_094.ab1   368 
  372  C MoSU002R_D12_BE446380Ld04P005G05G111R2_094.ab1   292 
  376    MoSU002F_D12_BE446380Ld04P005G05G111F2_094.ab1   376 
  392  C MoSU002R_D12_BE446380Ld04P005G05G111R2_094.ab1   272 
  404    MoSU002F_D12_BE446380Ld04P005G05G111F2_094.ab1   404 
  408  C MoSU002R_D12_BE446380Ld04P005G05G111R2_094.ab1   256 
  524    MoSU002F_D12_BE446380Ld04P005G05G111F2_094.ab1   524 
  528  C MoSU002R_D12_BE446380Ld04P005G05G111R2_094.ab1   136 
  544    MoSU002F_D12_BE446380Ld04P005G05G111F2_094.ab1   544 
  568  C MoSU002R_D12_BE446380Ld04P005G05G111R2_094.ab1    96 
  576    MoSU002F_D12_BE446380Ld04P005G05G111F2_094.ab1   576 
  600  C MoSU002R_D12_BE446380Ld04P005G05G111R2_094.ab1    64 
  624    MoSU002F_D12_BE446380Ld04P005G05G111F2_094.ab1   624 
Contig length: old 814, new 814

Contig length: old 814, new 814
New start: 0