No. words: 654; after pruning: 614


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    

Pass: 3
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 4
             Gap  Score    
Rjct: (2)   46   -5.6 -5.6 (1,1:221)   49  2.60 2.60 3.90  MoSU012F_H09_BE446380Sn31P005G05P020G121F1_065.ab1      228   304 (46)    MoSU012R_H09_BE446380Sn31P005G05P020G121R1_065.ab1        8    83 (221) *
  Worst pair: offset 0 
LLR breakdown: discreps: -3.0 (<20 part: -3.0 (#=7), >20:0.0 (#=0); in HQ: -3.0, out HQ 0.0), match: 1.6  trail: -1.7  lead: -2.6  total: -5.7   49  2.60 2.60 3.90  MoSU012F_H09_BE446380Sn31P005G05P020G121F1_065.ab1      228   304 (46)    MoSU012R_H09_BE446380Sn31P005G05P020G121R1_065.ab1        8    83 (221) *

Pass: 4
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
-5.6       0        1

Gap   # merges  # failures
 size
46       0        1

Offset
  0       1 

Read equivalence class histogram:
    1    2

Chimera merges: 


Contig 2:  2 nodes

 2 str. conn. components

Path
    1    MoSU012R_H09_BE446380Sn31P005G05P020G121R1_065.ab1     1 
Contig length: old 304, new 304

Contig 1:  2 nodes

 2 str. conn. components

Path
    1    MoSU012F_H09_BE446380Sn31P005G05P020G121F1_065.ab1     1 
Contig length: old 350, new 350