No. words: 1509; after pruning: 1483


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    3    0.0 12.5 (1,1:730)  693  0.00 0.14 0.14  MoSU021F_E07_BE446380Td05P020B11P005G111F1_055.ab1        4   731 (20)  C MoSU021R_E07_BE446380Td05P020B11P005G111R1_055.ab1   (30)   728     1 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 3       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  358 nodes

 181 str. conn. components

Path
    1  C MoSU021R_E07_BE446380Td05P020B11P005G111R1_055.ab1   758 
   90    MoSU021F_E07_BE446380Td05P020B11P005G111F1_055.ab1    62 
  106  C MoSU021R_E07_BE446380Td05P020B11P005G111R1_055.ab1   653 
  114    MoSU021F_E07_BE446380Td05P020B11P005G111F1_055.ab1    86 
  142  C MoSU021R_E07_BE446380Td05P020B11P005G111R1_055.ab1   617 
  190    MoSU021F_E07_BE446380Td05P020B11P005G111F1_055.ab1   162 
  278  C MoSU021R_E07_BE446380Td05P020B11P005G111R1_055.ab1   481 
  610    MoSU021F_E07_BE446380Td05P020B11P005G111F1_055.ab1   582 
  618  C MoSU021R_E07_BE446380Td05P020B11P005G111R1_055.ab1   141 
  650    MoSU021F_E07_BE446380Td05P020B11P005G111F1_055.ab1   622 
  674  C MoSU021R_E07_BE446380Td05P020B11P005G111R1_055.ab1    85 
  678    MoSU021F_E07_BE446380Td05P020B11P005G111F1_055.ab1   650 
  690  C MoSU021R_E07_BE446380Td05P020B11P005G111R1_055.ab1    69 
  702    MoSU021F_E07_BE446380Td05P020B11P005G111F1_055.ab1   674 
Contig length: old 778, new 779

Contig length: old 779, new 779
New start: 0