No. words: 1406; after pruning: 1380


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 1.2 (1,1:1334)   64  0.00 1.43 0.00  MoSU014F_C11_BE446622At01P018C02P018C081F1_091.ab1      660   729 (0)  C MoSU014R_C11_BE446622At01P018C02P018C081R1_091.ab1   (0)   677   607 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  1       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  34 nodes

 19 str. conn. components

Path
    1    MoSU014F_C11_BE446622At01P018C02P018C081F1_091.ab1     1 
  691  C MoSU014R_C11_BE446622At01P018C02P018C081R1_091.ab1   646 
  695    MoSU014F_C11_BE446622At01P018C02P018C081F1_091.ab1   695 
  715  C MoSU014R_C11_BE446622At01P018C02P018C081R1_091.ab1   622 
Contig length: old 1335, new 1336

Contig length: old 1336, new 1336
New start: 0