No. words: 1496; after pruning: 1470


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 4.0 (1,1:1300)  180  0.51 0.00 0.51  MoSU014F_D11_BE446622At02P018C02P018C081F1_089.ab1      607   801 (0)  C MoSU014R_D11_BE446622At02P018C02P018C081R1_089.ab1   (0)   695   502 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  94 nodes

 49 str. conn. components

Path
    1    MoSU014F_D11_BE446622At02P018C02P018C081F1_089.ab1     1 
  662  C MoSU014R_D11_BE446622At02P018C02P018C081R1_089.ab1   640 
  666    MoSU014F_D11_BE446622At02P018C02P018C081F1_089.ab1   666 
  678  C MoSU014R_D11_BE446622At02P018C02P018C081R1_089.ab1   624 
  682    MoSU014F_D11_BE446622At02P018C02P018C081F1_089.ab1   682 
  690  C MoSU014R_D11_BE446622At02P018C02P018C081R1_089.ab1   612 
  702    MoSU014F_D11_BE446622At02P018C02P018C081F1_089.ab1   702 
  706  C MoSU014R_D11_BE446622At02P018C02P018C081R1_089.ab1   596 
Contig length: old 1301, new 1301

Contig length: old 1301, new 1301
New start: 0