No. words: 1159; after pruning: 1133


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 12.5 (1,1:563)  548  0.00 0.00 0.00  MoSU002F_D03_BE471272As02P005B03B091F1_026.ab1        1   564 (11)  C MoSU002R_D03_BE471272As02P005B03B091R1_026.ab1   (20)   564     1 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  284 nodes

 144 str. conn. components

Path
    1  C MoSU002R_D03_BE471272As02P005B03B091R1_026.ab1   584 
   88    MoSU002F_D03_BE471272As02P005B03B091F1_026.ab1    68 
  104  C MoSU002R_D03_BE471272As02P005B03B091R1_026.ab1   481 
  112    MoSU002F_D03_BE471272As02P005B03B091F1_026.ab1    92 
  120  C MoSU002R_D03_BE471272As02P005B03B091R1_026.ab1   465 
  132    MoSU002F_D03_BE471272As02P005B03B091F1_026.ab1   112 
  140  C MoSU002R_D03_BE471272As02P005B03B091R1_026.ab1   445 
  160    MoSU002F_D03_BE471272As02P005B03B091F1_026.ab1   140 
  168  C MoSU002R_D03_BE471272As02P005B03B091R1_026.ab1   417 
  180    MoSU002F_D03_BE471272As02P005B03B091F1_026.ab1   160 
  188  C MoSU002R_D03_BE471272As02P005B03B091R1_026.ab1   397 
  316    MoSU002F_D03_BE471272As02P005B03B091F1_026.ab1   296 
  324  C MoSU002R_D03_BE471272As02P005B03B091R1_026.ab1   261 
  328    MoSU002F_D03_BE471272As02P005B03B091F1_026.ab1   308 
  344  C MoSU002R_D03_BE471272As02P005B03B091R1_026.ab1   241 
  364    MoSU002F_D03_BE471272As02P005B03B091F1_026.ab1   344 
  368  C MoSU002R_D03_BE471272As02P005B03B091R1_026.ab1   217 
  376    MoSU002F_D03_BE471272As02P005B03B091F1_026.ab1   356 
  392  C MoSU002R_D03_BE471272As02P005B03B091R1_026.ab1   193 
  424    MoSU002F_D03_BE471272As02P005B03B091F1_026.ab1   404 
  428  C MoSU002R_D03_BE471272As02P005B03B091R1_026.ab1   157 
  460    MoSU002F_D03_BE471272As02P005B03B091F1_026.ab1   440 
  468  C MoSU002R_D03_BE471272As02P005B03B091R1_026.ab1   117 
  476    MoSU002F_D03_BE471272As02P005B03B091F1_026.ab1   456 
  480  C MoSU002R_D03_BE471272As02P005B03B091R1_026.ab1   105 
  512    MoSU002F_D03_BE471272As02P005B03B091F1_026.ab1   492 
  528  C MoSU002R_D03_BE471272As02P005B03B091R1_026.ab1    57 
  532    MoSU002F_D03_BE471272As02P005B03B091F1_026.ab1   512 
  540  C MoSU002R_D03_BE471272As02P005B03B091R1_026.ab1    45 
  544    MoSU002F_D03_BE471272As02P005B03B091F1_026.ab1   524 
Contig length: old 595, new 595

Contig length: old 595, new 595
New start: 0