No. words: 1554; after pruning: 1514


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 16.5 (1,1:768)  754  0.13 0.13 0.00  MoSU006F_D05_BE471272As02P015D04D101F1_042.ab1        1   769 (12)  C MoSU006R_D05_BE471272As02P015D04D101R1_042.ab1   (3)   770     1 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  1       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  380 nodes

 192 str. conn. components

Path
    1  C MoSU006R_D05_BE471272As02P015D04D101R1_042.ab1   773 
   19    MoSU006F_D05_BE471272As02P015D04D101F1_042.ab1    15 
  390  C MoSU006R_D05_BE471272As02P015D04D101R1_042.ab1   384 
  402    MoSU006F_D05_BE471272As02P015D04D101F1_042.ab1   398 
  410  C MoSU006R_D05_BE471272As02P015D04D101R1_042.ab1   364 
  414    MoSU006F_D05_BE471272As02P015D04D101F1_042.ab1   410 
  426  C MoSU006R_D05_BE471272As02P015D04D101R1_042.ab1   348 
  430    MoSU006F_D05_BE471272As02P015D04D101F1_042.ab1   426 
  454  C MoSU006R_D05_BE471272As02P015D04D101R1_042.ab1   320 
  462    MoSU006F_D05_BE471272As02P015D04D101F1_042.ab1   458 
  466  C MoSU006R_D05_BE471272As02P015D04D101R1_042.ab1   308 
  470    MoSU006F_D05_BE471272As02P015D04D101F1_042.ab1   466 
  474  C MoSU006R_D05_BE471272As02P015D04D101R1_042.ab1   300 
  478    MoSU006F_D05_BE471272As02P015D04D101F1_042.ab1   474 
  482  C MoSU006R_D05_BE471272As02P015D04D101R1_042.ab1   292 
  522    MoSU006F_D05_BE471272As02P015D04D101F1_042.ab1   518 
  526  C MoSU006R_D05_BE471272As02P015D04D101R1_042.ab1   248 
  530    MoSU006F_D05_BE471272As02P015D04D101F1_042.ab1   526 
  534  C MoSU006R_D05_BE471272As02P015D04D101R1_042.ab1   240 
  542    MoSU006F_D05_BE471272As02P015D04D101F1_042.ab1   538 
  546  C MoSU006R_D05_BE471272As02P015D04D101R1_042.ab1   228 
  550    MoSU006F_D05_BE471272As02P015D04D101F1_042.ab1   546 
  554  C MoSU006R_D05_BE471272As02P015D04D101R1_042.ab1   220 
  586    MoSU006F_D05_BE471272As02P015D04D101F1_042.ab1   582 
  590  C MoSU006R_D05_BE471272As02P015D04D101R1_042.ab1   184 
  594    MoSU006F_D05_BE471272As02P015D04D101F1_042.ab1   590 
  598  C MoSU006R_D05_BE471272As02P015D04D101R1_042.ab1   176 
  634    MoSU006F_D05_BE471272As02P015D04D101F1_042.ab1   630 
  638  C MoSU006R_D05_BE471272As02P015D04D101R1_042.ab1   136 
  746    MoSU006F_D05_BE471272As02P015D04D101F1_042.ab1   742 
  750  C MoSU006R_D05_BE471272As02P015D04D101R1_042.ab1    24 
  758    MoSU006F_D05_BE471272As02P015D04D101F1_042.ab1   754 
  762  C MoSU006R_D05_BE471272As02P015D04D101R1_042.ab1    12 
  770    MoSU006F_D05_BE471272As02P015D04D101F1_042.ab1   766 
Contig length: old 785, new 785

Contig length: old 785, new 785
New start: 0