No. words: 1535; after pruning: 1495


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 16.0 (1,1:746)  726  0.54 0.00 0.00  MoSU006F_E05_BE471272At01P015D04D101F1_035.ab1        1   747 (21)  C MoSU006R_E05_BE471272At01P015D04D101R1_035.ab1   (20)   747     1 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  364 nodes

 184 str. conn. components

Path
    1  C MoSU006R_E05_BE471272At01P015D04D101R1_035.ab1   767 
   36    MoSU006F_E05_BE471272At01P015D04D101F1_035.ab1    16 
   60  C MoSU006R_E05_BE471272At01P015D04D101R1_035.ab1   708 
   72    MoSU006F_E05_BE471272At01P015D04D101F1_035.ab1    52 
  181  C MoSU006R_E05_BE471272At01P015D04D101R1_035.ab1   587 
  185    MoSU006F_E05_BE471272At01P015D04D101F1_035.ab1   165 
  409  C MoSU006R_E05_BE471272At01P015D04D101R1_035.ab1   359 
  417    MoSU006F_E05_BE471272At01P015D04D101F1_035.ab1   397 
  421  C MoSU006R_E05_BE471272At01P015D04D101R1_035.ab1   347 
  429    MoSU006F_E05_BE471272At01P015D04D101F1_035.ab1   409 
  433  C MoSU006R_E05_BE471272At01P015D04D101R1_035.ab1   335 
  441    MoSU006F_E05_BE471272At01P015D04D101F1_035.ab1   421 
  449  C MoSU006R_E05_BE471272At01P015D04D101R1_035.ab1   319 
  465    MoSU006F_E05_BE471272At01P015D04D101F1_035.ab1   445 
  489  C MoSU006R_E05_BE471272At01P015D04D101R1_035.ab1   279 
  493    MoSU006F_E05_BE471272At01P015D04D101F1_035.ab1   473 
  505  C MoSU006R_E05_BE471272At01P015D04D101R1_035.ab1   263 
  525    MoSU006F_E05_BE471272At01P015D04D101F1_035.ab1   505 
  529  C MoSU006R_E05_BE471272At01P015D04D101R1_035.ab1   239 
  557    MoSU006F_E05_BE471272At01P015D04D101F1_035.ab1   537 
  561  C MoSU006R_E05_BE471272At01P015D04D101R1_035.ab1   207 
  589    MoSU006F_E05_BE471272At01P015D04D101F1_035.ab1   569 
  593  C MoSU006R_E05_BE471272At01P015D04D101R1_035.ab1   175 
  601    MoSU006F_E05_BE471272At01P015D04D101F1_035.ab1   581 
  609  C MoSU006R_E05_BE471272At01P015D04D101R1_035.ab1   159 
  625    MoSU006F_E05_BE471272At01P015D04D101F1_035.ab1   605 
  633  C MoSU006R_E05_BE471272At01P015D04D101R1_035.ab1   135 
  721    MoSU006F_E05_BE471272At01P015D04D101F1_035.ab1   701 
  725  C MoSU006R_E05_BE471272At01P015D04D101R1_035.ab1    43 
  749    MoSU006F_E05_BE471272At01P015D04D101F1_035.ab1   729 
Contig length: old 788, new 788

Contig length: old 788, new 788
New start: 0