No. words: 1111; after pruning: 1085


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 11.1 (1,1:510)  493  0.00 0.00 0.20  MoSU002F_F03_BE471272At02P005B03B091F1_027.ab1        1   511 (39)  C MoSU002R_F03_BE471272At02P005B03B091R1_027.ab1   (51)   510     1 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  254 nodes

 129 str. conn. components

Path
    1  C MoSU002R_F03_BE471272At02P005B03B091R1_027.ab1   561 
   83    MoSU002F_F03_BE471272At02P005B03B091F1_027.ab1    32 
   91  C MoSU002R_F03_BE471272At02P005B03B091R1_027.ab1   471 
  123    MoSU002F_F03_BE471272At02P005B03B091F1_027.ab1    72 
  131  C MoSU002R_F03_BE471272At02P005B03B091R1_027.ab1   431 
  157    MoSU002F_F03_BE471272At02P005B03B091F1_027.ab1   107 
  165  C MoSU002R_F03_BE471272At02P005B03B091R1_027.ab1   397 
  185    MoSU002F_F03_BE471272At02P005B03B091F1_027.ab1   135 
  193  C MoSU002R_F03_BE471272At02P005B03B091R1_027.ab1   369 
  205    MoSU002F_F03_BE471272At02P005B03B091F1_027.ab1   155 
  209  C MoSU002R_F03_BE471272At02P005B03B091R1_027.ab1   353 
  221    MoSU002F_F03_BE471272At02P005B03B091F1_027.ab1   171 
  229  C MoSU002R_F03_BE471272At02P005B03B091R1_027.ab1   333 
  345    MoSU002F_F03_BE471272At02P005B03B091F1_027.ab1   295 
  349  C MoSU002R_F03_BE471272At02P005B03B091R1_027.ab1   213 
  413    MoSU002F_F03_BE471272At02P005B03B091F1_027.ab1   363 
  421  C MoSU002R_F03_BE471272At02P005B03B091R1_027.ab1   141 
  453    MoSU002F_F03_BE471272At02P005B03B091F1_027.ab1   403 
  461  C MoSU002R_F03_BE471272At02P005B03B091R1_027.ab1   101 
  481    MoSU002F_F03_BE471272At02P005B03B091F1_027.ab1   431 
  485  C MoSU002R_F03_BE471272At02P005B03B091R1_027.ab1    77 
  493    MoSU002F_F03_BE471272At02P005B03B091F1_027.ab1   443 
  497  C MoSU002R_F03_BE471272At02P005B03B091R1_027.ab1    65 
  509    MoSU002F_F03_BE471272At02P005B03B091F1_027.ab1   459 
  513  C MoSU002R_F03_BE471272At02P005B03B091R1_027.ab1    49 
  521    MoSU002F_F03_BE471272At02P005B03B091F1_027.ab1   471 
  533  C MoSU002R_F03_BE471272At02P005B03B091R1_027.ab1    29 
  537    MoSU002F_F03_BE471272At02P005B03B091F1_027.ab1   487 
Contig length: old 600, new 600

Contig length: old 600, new 600
New start: 0