No. words: 1337; after pruning: 1311


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 11.8 (1,1:530)  516  0.00 0.00 0.00  MoSU002F_B04_BE471272Ld04P005B03B091F1_029.ab1        1   531 (131)  C MoSU002R_B04_BE471272Ld04P005B03B091R1_029.ab1   (144)   531     1 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  266 nodes

 135 str. conn. components

Path
    1  C MoSU002R_B04_BE471272Ld04P005B03B091R1_029.ab1   675 
  188    MoSU002F_B04_BE471272Ld04P005B03B091F1_029.ab1    44 
  192  C MoSU002R_B04_BE471272Ld04P005B03B091R1_029.ab1   484 
  212    MoSU002F_B04_BE471272Ld04P005B03B091F1_029.ab1    68 
  220  C MoSU002R_B04_BE471272Ld04P005B03B091R1_029.ab1   456 
  224    MoSU002F_B04_BE471272Ld04P005B03B091F1_029.ab1    80 
  228  C MoSU002R_B04_BE471272Ld04P005B03B091R1_029.ab1   448 
  256    MoSU002F_B04_BE471272Ld04P005B03B091F1_029.ab1   112 
  260  C MoSU002R_B04_BE471272Ld04P005B03B091R1_029.ab1   416 
  304    MoSU002F_B04_BE471272Ld04P005B03B091F1_029.ab1   160 
  308  C MoSU002R_B04_BE471272Ld04P005B03B091R1_029.ab1   368 
  364    MoSU002F_B04_BE471272Ld04P005B03B091F1_029.ab1   220 
  372  C MoSU002R_B04_BE471272Ld04P005B03B091R1_029.ab1   304 
  388    MoSU002F_B04_BE471272Ld04P005B03B091F1_029.ab1   244 
  396  C MoSU002R_B04_BE471272Ld04P005B03B091R1_029.ab1   280 
  468    MoSU002F_B04_BE471272Ld04P005B03B091F1_029.ab1   324 
  480  C MoSU002R_B04_BE471272Ld04P005B03B091R1_029.ab1   196 
  528    MoSU002F_B04_BE471272Ld04P005B03B091F1_029.ab1   384 
  532  C MoSU002R_B04_BE471272Ld04P005B03B091R1_029.ab1   144 
  576    MoSU002F_B04_BE471272Ld04P005B03B091F1_029.ab1   432 
  584  C MoSU002R_B04_BE471272Ld04P005B03B091R1_029.ab1    92 
  616    MoSU002F_B04_BE471272Ld04P005B03B091F1_029.ab1   472 
  644  C MoSU002R_B04_BE471272Ld04P005B03B091R1_029.ab1    32 
  648    MoSU002F_B04_BE471272Ld04P005B03B091F1_029.ab1   504 
Contig length: old 806, new 806

Contig length: old 806, new 806
New start: 0