No. words: 1344; after pruning: 1318


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 9.3 (1,1:542)  524  0.00 0.00 0.18  MoSU002F_C04_BE471272Ld05P005B03B091F1_022.ab1        1   543 (129)  C MoSU002R_C04_BE471272Ld05P005B03B091R1_022.ab1   (130)   542     1 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  1       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  270 nodes

 137 str. conn. components

Path
    1  C MoSU002R_C04_BE471272Ld05P005B03B091R1_022.ab1   672 
  162    MoSU002F_C04_BE471272Ld05P005B03B091F1_022.ab1    32 
  166  C MoSU002R_C04_BE471272Ld05P005B03B091R1_022.ab1   507 
  174    MoSU002F_C04_BE471272Ld05P005B03B091F1_022.ab1    44 
  178  C MoSU002R_C04_BE471272Ld05P005B03B091R1_022.ab1   495 
  190    MoSU002F_C04_BE471272Ld05P005B03B091F1_022.ab1    60 
  202  C MoSU002R_C04_BE471272Ld05P005B03B091R1_022.ab1   471 
  246    MoSU002F_C04_BE471272Ld05P005B03B091F1_022.ab1   116 
  250  C MoSU002R_C04_BE471272Ld05P005B03B091R1_022.ab1   423 
  270    MoSU002F_C04_BE471272Ld05P005B03B091F1_022.ab1   140 
  274  C MoSU002R_C04_BE471272Ld05P005B03B091R1_022.ab1   399 
  290    MoSU002F_C04_BE471272Ld05P005B03B091F1_022.ab1   160 
  294  C MoSU002R_C04_BE471272Ld05P005B03B091R1_022.ab1   379 
  330    MoSU002F_C04_BE471272Ld05P005B03B091F1_022.ab1   200 
  338  C MoSU002R_C04_BE471272Ld05P005B03B091R1_022.ab1   335 
  354    MoSU002F_C04_BE471272Ld05P005B03B091F1_022.ab1   224 
  378  C MoSU002R_C04_BE471272Ld05P005B03B091R1_022.ab1   295 
  390    MoSU002F_C04_BE471272Ld05P005B03B091F1_022.ab1   260 
  414  C MoSU002R_C04_BE471272Ld05P005B03B091R1_022.ab1   259 
  542    MoSU002F_C04_BE471272Ld05P005B03B091F1_022.ab1   412 
  546  C MoSU002R_C04_BE471272Ld05P005B03B091R1_022.ab1   127 
  586    MoSU002F_C04_BE471272Ld05P005B03B091F1_022.ab1   456 
  590  C MoSU002R_C04_BE471272Ld05P005B03B091R1_022.ab1    83 
  610    MoSU002F_C04_BE471272Ld05P005B03B091F1_022.ab1   480 
Contig length: old 801, new 802

Contig length: old 802, new 802
New start: 0