No. words: 1576; after pruning: 1536


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 16.5 (1,1:770)  748  0.13 0.13 0.00  MoSU006F_C06_BE471272Ld05P015D04D101F1_038.ab1        1   763 (0)  C MoSU006R_C06_BE471272Ld05P015D04D101R1_038.ab1   (41)   772     9 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  378 nodes

 191 str. conn. components

Path
    1  C MoSU006R_C06_BE471272Ld05P015D04D101R1_038.ab1   813 
   45    MoSU006F_C06_BE471272Ld05P015D04D101F1_038.ab1     4 
   49  C MoSU006R_C06_BE471272Ld05P015D04D101R1_038.ab1   765 
   58    MoSU006F_C06_BE471272Ld05P015D04D101F1_038.ab1    16 
   74  C MoSU006R_C06_BE471272Ld05P015D04D101R1_038.ab1   740 
   78    MoSU006F_C06_BE471272Ld05P015D04D101F1_038.ab1    36 
  461  C MoSU006R_C06_BE471272Ld05P015D04D101R1_038.ab1   353 
  469    MoSU006F_C06_BE471272Ld05P015D04D101F1_038.ab1   427 
  481  C MoSU006R_C06_BE471272Ld05P015D04D101R1_038.ab1   333 
  501    MoSU006F_C06_BE471272Ld05P015D04D101F1_038.ab1   459 
  513  C MoSU006R_C06_BE471272Ld05P015D04D101R1_038.ab1   301 
  521    MoSU006F_C06_BE471272Ld05P015D04D101F1_038.ab1   479 
  549  C MoSU006R_C06_BE471272Ld05P015D04D101R1_038.ab1   265 
  553    MoSU006F_C06_BE471272Ld05P015D04D101F1_038.ab1   511 
  557  C MoSU006R_C06_BE471272Ld05P015D04D101R1_038.ab1   257 
  569    MoSU006F_C06_BE471272Ld05P015D04D101F1_038.ab1   527 
  573  C MoSU006R_C06_BE471272Ld05P015D04D101R1_038.ab1   241 
  581    MoSU006F_C06_BE471272Ld05P015D04D101F1_038.ab1   539 
  593  C MoSU006R_C06_BE471272Ld05P015D04D101R1_038.ab1   221 
  597    MoSU006F_C06_BE471272Ld05P015D04D101F1_038.ab1   555 
  605  C MoSU006R_C06_BE471272Ld05P015D04D101R1_038.ab1   209 
  625    MoSU006F_C06_BE471272Ld05P015D04D101F1_038.ab1   583 
  629  C MoSU006R_C06_BE471272Ld05P015D04D101R1_038.ab1   185 
Contig length: old 813, new 813

Contig length: old 813, new 813
New start: 0