No. words: 1693; after pruning: 1653


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 16.2 (1,1:766)  731  1.04 0.13 0.00  MoSU006F_F06_BE471272Ld08P015D04D101F1_047.ab1        1   767 (88)  C MoSU006R_F06_BE471272Ld08P015D04D101R1_047.ab1   (70)   768     1 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  1       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  364 nodes

 184 str. conn. components

Path
    1  C MoSU006R_F06_BE471272Ld08P015D04D101R1_047.ab1   838 
   74    MoSU006F_F06_BE471272Ld08P015D04D101F1_047.ab1     4 
   85  C MoSU006R_F06_BE471272Ld08P015D04D101R1_047.ab1   753 
   89    MoSU006F_F06_BE471272Ld08P015D04D101F1_047.ab1    19 
  127  C MoSU006R_F06_BE471272Ld08P015D04D101R1_047.ab1   711 
  136    MoSU006F_F06_BE471272Ld08P015D04D101F1_047.ab1    66 
  455  C MoSU006R_F06_BE471272Ld08P015D04D101R1_047.ab1   383 
  459    MoSU006F_F06_BE471272Ld08P015D04D101F1_047.ab1   389 
  479  C MoSU006R_F06_BE471272Ld08P015D04D101R1_047.ab1   359 
  483    MoSU006F_F06_BE471272Ld08P015D04D101F1_047.ab1   413 
  491  C MoSU006R_F06_BE471272Ld08P015D04D101R1_047.ab1   347 
  499    MoSU006F_F06_BE471272Ld08P015D04D101F1_047.ab1   429 
  519  C MoSU006R_F06_BE471272Ld08P015D04D101R1_047.ab1   319 
  543    MoSU006F_F06_BE471272Ld08P015D04D101F1_047.ab1   473 
  555  C MoSU006R_F06_BE471272Ld08P015D04D101R1_047.ab1   283 
  571    MoSU006F_F06_BE471272Ld08P015D04D101F1_047.ab1   501 
  575  C MoSU006R_F06_BE471272Ld08P015D04D101R1_047.ab1   263 
  579    MoSU006F_F06_BE471272Ld08P015D04D101F1_047.ab1   509 
  587  C MoSU006R_F06_BE471272Ld08P015D04D101R1_047.ab1   251 
  595    MoSU006F_F06_BE471272Ld08P015D04D101F1_047.ab1   525 
  603  C MoSU006R_F06_BE471272Ld08P015D04D101R1_047.ab1   235 
  619    MoSU006F_F06_BE471272Ld08P015D04D101F1_047.ab1   549 
  623  C MoSU006R_F06_BE471272Ld08P015D04D101R1_047.ab1   215 
  627    MoSU006F_F06_BE471272Ld08P015D04D101F1_047.ab1   557 
  631  C MoSU006R_F06_BE471272Ld08P015D04D101R1_047.ab1   207 
  651    MoSU006F_F06_BE471272Ld08P015D04D101F1_047.ab1   581 
  659  C MoSU006R_F06_BE471272Ld08P015D04D101R1_047.ab1   179 
  815    MoSU006F_F06_BE471272Ld08P015D04D101F1_047.ab1   745 
  825  C MoSU006R_F06_BE471272Ld08P015D04D101R1_047.ab1    13 
  833    MoSU006F_F06_BE471272Ld08P015D04D101F1_047.ab1   763 
Contig length: old 926, new 925

Contig length: old 925, new 926
New start: 0 
I Change at: 84; seg lengths: entry 1, contig 0
S Change at: 100; seg lengths: entry 4, contig 4