No. words: 1497; after pruning: 1471


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    1    0.0 14.6 (1,1:740)  685  0.71 0.00 0.00  MoSU006F_H06_BE471272Ld10P015D04D101F1_048.ab1       33   741 (46)  C MoSU006R_H06_BE471272Ld10P015D04D101R1_048.ab1   (1)   709     1 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 1       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  348 nodes

 176 str. conn. components

Path
    1    MoSU006F_H06_BE471272Ld10P015D04D101F1_048.ab1     1 
  411  C MoSU006R_H06_BE471272Ld10P015D04D101R1_048.ab1   331 
  419    MoSU006F_H06_BE471272Ld10P015D04D101F1_048.ab1   419 
  423  C MoSU006R_H06_BE471272Ld10P015D04D101R1_048.ab1   319 
  427    MoSU006F_H06_BE471272Ld10P015D04D101F1_048.ab1   427 
  443  C MoSU006R_H06_BE471272Ld10P015D04D101R1_048.ab1   299 
  447    MoSU006F_H06_BE471272Ld10P015D04D101F1_048.ab1   447 
  451  C MoSU006R_H06_BE471272Ld10P015D04D101R1_048.ab1   291 
  459    MoSU006F_H06_BE471272Ld10P015D04D101F1_048.ab1   459 
  463  C MoSU006R_H06_BE471272Ld10P015D04D101R1_048.ab1   279 
  467    MoSU006F_H06_BE471272Ld10P015D04D101F1_048.ab1   467 
  471  C MoSU006R_H06_BE471272Ld10P015D04D101R1_048.ab1   271 
  479    MoSU006F_H06_BE471272Ld10P015D04D101F1_048.ab1   479 
  567  C MoSU006R_H06_BE471272Ld10P015D04D101R1_048.ab1   175 
  583    MoSU006F_H06_BE471272Ld10P015D04D101F1_048.ab1   583 
  587  C MoSU006R_H06_BE471272Ld10P015D04D101R1_048.ab1   155 
  591    MoSU006F_H06_BE471272Ld10P015D04D101F1_048.ab1   591 
  595  C MoSU006R_H06_BE471272Ld10P015D04D101R1_048.ab1   147 
  631    MoSU006F_H06_BE471272Ld10P015D04D101F1_048.ab1   631 
  635  C MoSU006R_H06_BE471272Ld10P015D04D101R1_048.ab1   107 
  647    MoSU006F_H06_BE471272Ld10P015D04D101F1_048.ab1   647 
  651  C MoSU006R_H06_BE471272Ld10P015D04D101R1_048.ab1    91 
  683    MoSU006F_H06_BE471272Ld10P015D04D101F1_048.ab1   683 
  687  C MoSU006R_H06_BE471272Ld10P015D04D101R1_048.ab1    55 
  695    MoSU006F_H06_BE471272Ld10P015D04D101F1_048.ab1   695 
  699  C MoSU006R_H06_BE471272Ld10P015D04D101R1_048.ab1    43 
  703    MoSU006F_H06_BE471272Ld10P015D04D101F1_048.ab1   703 
  711  C MoSU006R_H06_BE471272Ld10P015D04D101R1_048.ab1    31 
  715    MoSU006F_H06_BE471272Ld10P015D04D101F1_048.ab1   715 
  728  C MoSU006R_H06_BE471272Ld10P015D04D101R1_048.ab1    14 
  736    MoSU006F_H06_BE471272Ld10P015D04D101F1_048.ab1   736 
Contig length: old 787, new 787

Contig length: old 787, new 787
New start: 0