No. words: 565; after pruning: 539


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    

Pass: 3
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 4
             Gap  Score    
Merge:(0)    5   -0.5 -0.5 (1,1:230)  201  0.88 0.00 0.88  MoSU015F_C06_BE471272Ta19P023G01P005B091F1_044.ab1        6   231 (52)  C MoSU015R_C06_BE471272Ta19P023G01P005B091R1_044.ab1   (57)   225     2 *

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
-0.5       1        0

Gap   # merges  # failures
 size
 5       1        0

Offset
  0       1 

Read equivalence class histogram:
    1    2

Chimera merges: 


Contig 1:  108 nodes

 56 str. conn. components

Path
    1  C MoSU015R_C06_BE471272Ta19P023G01P005B091R1_044.ab1   282 
  177    MoSU015F_C06_BE471272Ta19P023G01P005B091F1_044.ab1   125 
  181  C MoSU015R_C06_BE471272Ta19P023G01P005B091R1_044.ab1   102 
  189    MoSU015F_C06_BE471272Ta19P023G01P005B091F1_044.ab1   137 
  197  C MoSU015R_C06_BE471272Ta19P023G01P005B091R1_044.ab1    86 
  201    MoSU015F_C06_BE471272Ta19P023G01P005B091F1_044.ab1   149 
  217  C MoSU015R_C06_BE471272Ta19P023G01P005B091R1_044.ab1    66 
  221    MoSU015F_C06_BE471272Ta19P023G01P005B091F1_044.ab1   169 
Contig length: old 334, new 335

Contig length: old 335, new 335
New start: 0