No. words: 579; after pruning: 553


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    

Pass: 3
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 4
             Gap  Score    
Merge:(0)    7   -0.6 -0.6 (1,1:240)  205  0.00 0.42 1.69  MoSU015F_A04_BE471272Td01P023G01P005B091F1_032.ab1        8   244 (41)  C MoSU015R_A04_BE471272Td01P023G01P005B091R1_032.ab1   (60)   234     1 *

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
-0.6       1        0

Gap   # merges  # failures
 size
 7       1        0

Offset
  0       1 

Read equivalence class histogram:
    1    2

Chimera merges: 


Contig 1:  104 nodes

 54 str. conn. components

Path
    1  C MoSU015R_A04_BE471272Td01P023G01P005B091R1_032.ab1   294 
  135    MoSU015F_A04_BE471272Td01P023G01P005B091F1_032.ab1    81 
  139  C MoSU015R_A04_BE471272Td01P023G01P005B091R1_032.ab1   156 
  163    MoSU015F_A04_BE471272Td01P023G01P005B091F1_032.ab1   109 
  175  C MoSU015R_A04_BE471272Td01P023G01P005B091R1_032.ab1   120 
  179    MoSU015F_A04_BE471272Td01P023G01P005B091F1_032.ab1   125 
Contig length: old 338, new 339

Contig length: old 339, new 339
New start: 0