No. words: 1000; after pruning: 974


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    2    0.0 8.8 (1,1:455)  435  0.00 0.00 0.44  MoSU015F_C01_BE471272Td03P005B03P023B021F1_011.ab1        3   457 (43)  C MoSU015R_C01_BE471272Td03P005B03P023B021R1_011.ab1   (47)   453     1 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 2       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  224 nodes

 114 str. conn. components

Path
    1  C MoSU015R_C01_BE471272Td03P005B03P023B021R1_011.ab1   500 
  203    MoSU015F_C01_BE471272Td03P005B03P023B021F1_011.ab1   158 
  247  C MoSU015R_C01_BE471272Td03P005B03P023B021R1_011.ab1   254 
  391    MoSU015F_C01_BE471272Td03P005B03P023B021F1_011.ab1   346 
  399  C MoSU015R_C01_BE471272Td03P005B03P023B021R1_011.ab1   102 
  411    MoSU015F_C01_BE471272Td03P005B03P023B021F1_011.ab1   366 
  427  C MoSU015R_C01_BE471272Td03P005B03P023B021R1_011.ab1    74 
  447    MoSU015F_C01_BE471272Td03P005B03P023B021F1_011.ab1   402 
Contig length: old 544, new 545

Contig length: old 545, new 545
New start: 0