No. words: 1116; after pruning: 1090


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    3    0.0 10.9 (1,1:539)  523  0.00 0.00 0.00  MoSU002F_A03_BE471272Tu01P005B03B091F1_017.ab1        4   540 (21)  C MoSU002R_A03_BE471272Tu01P005B03B091R1_017.ab1   (18)   537     1 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 3       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  270 nodes

 137 str. conn. components

Path
    1  C MoSU002R_A03_BE471272Tu01P005B03B091R1_017.ab1   555 
   54    MoSU002F_A03_BE471272Tu01P005B03B091F1_017.ab1    39 
   58  C MoSU002R_A03_BE471272Tu01P005B03B091R1_017.ab1   498 
  134    MoSU002F_A03_BE471272Tu01P005B03B091F1_017.ab1   119 
  142  C MoSU002R_A03_BE471272Tu01P005B03B091R1_017.ab1   414 
  162    MoSU002F_A03_BE471272Tu01P005B03B091F1_017.ab1   147 
  170  C MoSU002R_A03_BE471272Tu01P005B03B091R1_017.ab1   386 
  182    MoSU002F_A03_BE471272Tu01P005B03B091F1_017.ab1   167 
  190  C MoSU002R_A03_BE471272Tu01P005B03B091R1_017.ab1   366 
  298    MoSU002F_A03_BE471272Tu01P005B03B091F1_017.ab1   283 
  338  C MoSU002R_A03_BE471272Tu01P005B03B091R1_017.ab1   218 
  402    MoSU002F_A03_BE471272Tu01P005B03B091F1_017.ab1   387 
  410  C MoSU002R_A03_BE471272Tu01P005B03B091R1_017.ab1   146 
  430    MoSU002F_A03_BE471272Tu01P005B03B091F1_017.ab1   415 
  474  C MoSU002R_A03_BE471272Tu01P005B03B091R1_017.ab1    82 
  482    MoSU002F_A03_BE471272Tu01P005B03B091F1_017.ab1   467 
  486  C MoSU002R_A03_BE471272Tu01P005B03B091R1_017.ab1    70 
  494    MoSU002F_A03_BE471272Tu01P005B03B091F1_017.ab1   479 
  502  C MoSU002R_A03_BE471272Tu01P005B03B091R1_017.ab1    54 
  506    MoSU002F_A03_BE471272Tu01P005B03B091F1_017.ab1   491 
  522  C MoSU002R_A03_BE471272Tu01P005B03B091R1_017.ab1    34 
  526    MoSU002F_A03_BE471272Tu01P005B03B091F1_017.ab1   511 
Contig length: old 576, new 576

Contig length: old 576, new 576
New start: 0