No. words: 1107; after pruning: 1081


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 11.8 (1,1:533)  520  0.00 0.00 0.00  MoSU002F_B03_BE471272Tu02P005B03B091F1_025.ab1        1   534 (19)  C MoSU002R_B03_BE471272Tu02P005B03B091R1_025.ab1   (20)   534     1 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  268 nodes

 136 str. conn. components

Path
    1  C MoSU002R_B03_BE471272Tu02P005B03B091R1_025.ab1   554 
  132    MoSU002F_B03_BE471272Tu02P005B03B091F1_025.ab1   112 
  140  C MoSU002R_B03_BE471272Tu02P005B03B091R1_025.ab1   415 
  160    MoSU002F_B03_BE471272Tu02P005B03B091F1_025.ab1   140 
  168  C MoSU002R_B03_BE471272Tu02P005B03B091R1_025.ab1   387 
  180    MoSU002F_B03_BE471272Tu02P005B03B091F1_025.ab1   160 
  184  C MoSU002R_B03_BE471272Tu02P005B03B091R1_025.ab1   371 
  300    MoSU002F_B03_BE471272Tu02P005B03B091F1_025.ab1   280 
  336  C MoSU002R_B03_BE471272Tu02P005B03B091R1_025.ab1   219 
  340    MoSU002F_B03_BE471272Tu02P005B03B091F1_025.ab1   320 
  372  C MoSU002R_B03_BE471272Tu02P005B03B091R1_025.ab1   183 
  392    MoSU002F_B03_BE471272Tu02P005B03B091F1_025.ab1   372 
  396  C MoSU002R_B03_BE471272Tu02P005B03B091R1_025.ab1   159 
  400    MoSU002F_B03_BE471272Tu02P005B03B091F1_025.ab1   380 
  408  C MoSU002R_B03_BE471272Tu02P005B03B091R1_025.ab1   147 
  412    MoSU002F_B03_BE471272Tu02P005B03B091F1_025.ab1   392 
  416  C MoSU002R_B03_BE471272Tu02P005B03B091R1_025.ab1   139 
  428    MoSU002F_B03_BE471272Tu02P005B03B091F1_025.ab1   408 
  448  C MoSU002R_B03_BE471272Tu02P005B03B091R1_025.ab1   107 
  452    MoSU002F_B03_BE471272Tu02P005B03B091F1_025.ab1   432 
  460  C MoSU002R_B03_BE471272Tu02P005B03B091R1_025.ab1    95 
  480    MoSU002F_B03_BE471272Tu02P005B03B091F1_025.ab1   460 
  492  C MoSU002R_B03_BE471272Tu02P005B03B091R1_025.ab1    63 
  496    MoSU002F_B03_BE471272Tu02P005B03B091F1_025.ab1   476 
  520  C MoSU002R_B03_BE471272Tu02P005B03B091R1_025.ab1    35 
  524    MoSU002F_B03_BE471272Tu02P005B03B091F1_025.ab1   504 
Contig length: old 573, new 573

Contig length: old 573, new 573
New start: 0