No. words: 1018; after pruning: 992


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    4    0.0 4.3 (1,1:339)  325  0.00 0.00 0.30  MoSU014F_A04_BE488496Ld03P018B03P018B091F1_032.ab1        5   340 (176)  C MoSU014R_A04_BE488496Ld03P018B03P018B091R1_032.ab1   (167)   335     1 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 4       1        0

Offset
  1       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  166 nodes

 85 str. conn. components

Path
    1  C MoSU014R_A04_BE488496Ld03P018B03P018B091R1_032.ab1   502 
  356    MoSU014F_A04_BE488496Ld03P018B03P018B091F1_032.ab1   193 
  384  C MoSU014R_A04_BE488496Ld03P018B03P018B091R1_032.ab1   119 
  404    MoSU014F_A04_BE488496Ld03P018B03P018B091F1_032.ab1   241 
  420  C MoSU014R_A04_BE488496Ld03P018B03P018B091R1_032.ab1    83 
  428    MoSU014F_A04_BE488496Ld03P018B03P018B091F1_032.ab1   265 
  440  C MoSU014R_A04_BE488496Ld03P018B03P018B091R1_032.ab1    63 
  452    MoSU014F_A04_BE488496Ld03P018B03P018B091F1_032.ab1   289 
Contig length: old 678, new 679

Contig length: old 679, new 679
New start: 0