No. words: 1018; after pruning: 992


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 4.3 (1,1:340)  325  0.00 0.29 0.29  MoSU014F_C04_BE488496Ld05P018B03P018B091F1_028.ab1        1   341 (175)  C MoSU014R_C04_BE488496Ld05P018B03P018B091R1_028.ab1   (161)   341     1 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  166 nodes

 85 str. conn. components

Path
    1  C MoSU014R_C04_BE488496Ld05P018B03P018B091R1_028.ab1   502 
  356    MoSU014F_C04_BE488496Ld05P018B03P018B091F1_028.ab1   194 
  360  C MoSU014R_C04_BE488496Ld05P018B03P018B091R1_028.ab1   143 
  432    MoSU014F_C04_BE488496Ld05P018B03P018B091F1_028.ab1   270 
  440  C MoSU014R_C04_BE488496Ld05P018B03P018B091R1_028.ab1    63 
  460    MoSU014F_C04_BE488496Ld05P018B03P018B091F1_028.ab1   298 
Contig length: old 677, new 678

Contig length: old 678, new 678
New start: 0