No. words: 1028; after pruning: 1002


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    4    0.0 4.3 (1,1:339)  324  0.00 0.00 0.30  MoSU014F_D04_BE488496Ld06P018B03P018B091F1_026.ab1        5   340 (177)  C MoSU014R_D04_BE488496Ld06P018B03P018B091R1_026.ab1   (176)   335     1 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 4       1        0

Offset
  1       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  166 nodes

 85 str. conn. components

Path
    1  C MoSU014R_D04_BE488496Ld06P018B03P018B091R1_026.ab1   511 
  289    MoSU014F_D04_BE488496Ld06P018B03P018B091F1_026.ab1   117 
  301  C MoSU014R_D04_BE488496Ld06P018B03P018B091R1_026.ab1   211 
  329    MoSU014F_D04_BE488496Ld06P018B03P018B091F1_026.ab1   157 
  369  C MoSU014R_D04_BE488496Ld06P018B03P018B091R1_026.ab1   143 
  401    MoSU014F_D04_BE488496Ld06P018B03P018B091F1_026.ab1   229 
  421  C MoSU014R_D04_BE488496Ld06P018B03P018B091R1_026.ab1    91 
  437    MoSU014F_D04_BE488496Ld06P018B03P018B091F1_026.ab1   265 
Contig length: old 688, new 689

Contig length: old 689, new 689
New start: 0