No. words: 1675; after pruning: 1635


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 15.5 (1,1:713)  686  0.28 0.00 0.00  MoSU022F_E01_BE488670Ld01P005F04P005F101F1_007.ab1        1   714 (103)  C MoSU022R_E01_BE488670Ld01P005F04P005F101R1_007.ab1   (144)   714     1 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  350 nodes

 177 str. conn. components

Path
    1  C MoSU022R_E01_BE488670Ld01P005F04P005F101R1_007.ab1   858 
  156    MoSU022F_E01_BE488670Ld01P005F04P005F101F1_007.ab1    12 
  203  C MoSU022R_E01_BE488670Ld01P005F04P005F101R1_007.ab1   656 
  207    MoSU022F_E01_BE488670Ld01P005F04P005F101F1_007.ab1    63 
  815  C MoSU022R_E01_BE488670Ld01P005F04P005F101R1_007.ab1    44 
  823    MoSU022F_E01_BE488670Ld01P005F04P005F101F1_007.ab1   679 
  827  C MoSU022R_E01_BE488670Ld01P005F04P005F101R1_007.ab1    32 
  831    MoSU022F_E01_BE488670Ld01P005F04P005F101F1_007.ab1   687 
  843  C MoSU022R_E01_BE488670Ld01P005F04P005F101R1_007.ab1    16 
  851    MoSU022F_E01_BE488670Ld01P005F04P005F101F1_007.ab1   707 
Contig length: old 961, new 961

Contig length: old 961, new 961
New start: 0 
S Change at: 127; seg lengths: entry 1, contig 1