No. words: 1697; after pruning: 1643


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 15.6 (1,1:713)  680  0.14 0.00 0.28  MoSU022F_B02_BE488670Ld06P005F04P005F101F1_014.ab1        1   715 (146)  C MoSU022R_B02_BE488670Ld06P005F04P005F101R1_014.ab1   (123)   713     1 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  346 nodes

 175 str. conn. components

Path
    1  C MoSU022R_B02_BE488670Ld06P005F04P005F101R1_014.ab1   836 
  135    MoSU022F_B02_BE488670Ld06P005F04P005F101F1_014.ab1    12 
  159  C MoSU022R_B02_BE488670Ld06P005F04P005F101R1_014.ab1   678 
  170    MoSU022F_B02_BE488670Ld06P005F04P005F101F1_014.ab1    47 
  182  C MoSU022R_B02_BE488670Ld06P005F04P005F101R1_014.ab1   655 
  194    MoSU022F_B02_BE488670Ld06P005F04P005F101F1_014.ab1    71 
  214  C MoSU022R_B02_BE488670Ld06P005F04P005F101R1_014.ab1   623 
  226    MoSU022F_B02_BE488670Ld06P005F04P005F101F1_014.ab1   103 
  230  C MoSU022R_B02_BE488670Ld06P005F04P005F101R1_014.ab1   607 
  234    MoSU022F_B02_BE488670Ld06P005F04P005F101F1_014.ab1   111 
  246  C MoSU022R_B02_BE488670Ld06P005F04P005F101R1_014.ab1   591 
  250    MoSU022F_B02_BE488670Ld06P005F04P005F101F1_014.ab1   127 
  262  C MoSU022R_B02_BE488670Ld06P005F04P005F101R1_014.ab1   575 
  270    MoSU022F_B02_BE488670Ld06P005F04P005F101F1_014.ab1   147 
  278  C MoSU022R_B02_BE488670Ld06P005F04P005F101R1_014.ab1   559 
  282    MoSU022F_B02_BE488670Ld06P005F04P005F101F1_014.ab1   159 
  298  C MoSU022R_B02_BE488670Ld06P005F04P005F101R1_014.ab1   539 
  306    MoSU022F_B02_BE488670Ld06P005F04P005F101F1_014.ab1   183 
  334  C MoSU022R_B02_BE488670Ld06P005F04P005F101R1_014.ab1   503 
  342    MoSU022F_B02_BE488670Ld06P005F04P005F101F1_014.ab1   219 
  790  C MoSU022R_B02_BE488670Ld06P005F04P005F101R1_014.ab1    47 
  820    MoSU022F_B02_BE488670Ld06P005F04P005F101F1_014.ab1   699 
  824  C MoSU022R_B02_BE488670Ld06P005F04P005F101R1_014.ab1    13 
  832    MoSU022F_B02_BE488670Ld06P005F04P005F101F1_014.ab1   711 
Contig length: old 983, new 982

Contig length: old 982, new 983
New start: 0 
I Change at: 817; seg lengths: entry 1, contig 0
S Change at: 880; seg lengths: entry 1, contig 1