No. words: 1726; after pruning: 1686


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 14.4 (1,1:721)  693  0.00 0.00 0.14  MoSU022F_D02_BE488670Ld08P005F04P005F101F1_010.ab1        1   722 (140)  C MoSU022R_D02_BE488670Ld08P005F04P005F101R1_010.ab1   (143)   721     1 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  1       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  356 nodes

 180 str. conn. components

Path
    1  C MoSU022R_D02_BE488670Ld08P005F04P005F101R1_010.ab1   864 
  155    MoSU022F_D02_BE488670Ld08P005F04P005F101F1_010.ab1    12 
  203  C MoSU022R_D02_BE488670Ld08P005F04P005F101R1_010.ab1   662 
  207    MoSU022F_D02_BE488670Ld08P005F04P005F101F1_010.ab1    64 
  815  C MoSU022R_D02_BE488670Ld08P005F04P005F101R1_010.ab1    50 
  823    MoSU022F_D02_BE488670Ld08P005F04P005F101F1_010.ab1   680 
  827  C MoSU022R_D02_BE488670Ld08P005F04P005F101R1_010.ab1    38 
  839    MoSU022F_D02_BE488670Ld08P005F04P005F101F1_010.ab1   696 
  843  C MoSU022R_D02_BE488670Ld08P005F04P005F101R1_010.ab1    22 
  855    MoSU022F_D02_BE488670Ld08P005F04P005F101F1_010.ab1   712 
Contig length: old 1004, new 1005

Contig length: old 1005, new 1005
New start: 0 
S Change at: 126; seg lengths: entry 1, contig 1