No. words: 1416; after pruning: 1390


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 12.8 (1,1:717)  559  0.00 0.00 0.00  MoSU022F_E02_BE488670Ld09P005F04P005F101F1_008.ab1        1   575 (0)  C MoSU022R_E02_BE488670Ld09P005F04P005F101R1_008.ab1   (123)   718   144 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  284 nodes

 144 str. conn. components

Path
    1  C MoSU022R_E02_BE488670Ld09P005F04P005F101R1_008.ab1   841 
  135    MoSU022F_E02_BE488670Ld09P005F04P005F101F1_008.ab1    12 
  151  C MoSU022R_E02_BE488670Ld09P005F04P005F101R1_008.ab1   691 
  155    MoSU022F_E02_BE488670Ld09P005F04P005F101F1_008.ab1    32 
  159  C MoSU022R_E02_BE488670Ld09P005F04P005F101R1_008.ab1   683 
  171    MoSU022F_E02_BE488670Ld09P005F04P005F101F1_008.ab1    48 
  175  C MoSU022R_E02_BE488670Ld09P005F04P005F101R1_008.ab1   667 
  179    MoSU022F_E02_BE488670Ld09P005F04P005F101F1_008.ab1    56 
  207  C MoSU022R_E02_BE488670Ld09P005F04P005F101R1_008.ab1   635 
  231    MoSU022F_E02_BE488670Ld09P005F04P005F101F1_008.ab1   108 
  239  C MoSU022R_E02_BE488670Ld09P005F04P005F101R1_008.ab1   603 
  243    MoSU022F_E02_BE488670Ld09P005F04P005F101F1_008.ab1   120 
  267  C MoSU022R_E02_BE488670Ld09P005F04P005F101R1_008.ab1   575 
  271    MoSU022F_E02_BE488670Ld09P005F04P005F101F1_008.ab1   148 
  275  C MoSU022R_E02_BE488670Ld09P005F04P005F101R1_008.ab1   567 
  279    MoSU022F_E02_BE488670Ld09P005F04P005F101F1_008.ab1   156 
  391  C MoSU022R_E02_BE488670Ld09P005F04P005F101R1_008.ab1   451 
  399    MoSU022F_E02_BE488670Ld09P005F04P005F101F1_008.ab1   276 
  479  C MoSU022R_E02_BE488670Ld09P005F04P005F101R1_008.ab1   363 
  483    MoSU022F_E02_BE488670Ld09P005F04P005F101F1_008.ab1   360 
  491  C MoSU022R_E02_BE488670Ld09P005F04P005F101R1_008.ab1   351 
  503    MoSU022F_E02_BE488670Ld09P005F04P005F101F1_008.ab1   380 
  507  C MoSU022R_E02_BE488670Ld09P005F04P005F101R1_008.ab1   335 
Contig length: old 841, new 841

Contig length: old 841, new 841
New start: 0