No. words: 1723; after pruning: 1683


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 15.9 (1,1:720)  693  0.00 0.00 0.14  MoSU022F_F02_BE488670Ld10P005F04P005F101F1_006.ab1        1   721 (130)  C MoSU022R_F02_BE488670Ld10P005F04P005F101R1_006.ab1   (152)   720     1 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  1       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  350 nodes

 177 str. conn. components

Path
    1  C MoSU022R_F02_BE488670Ld10P005F04P005F101R1_006.ab1   872 
  164    MoSU022F_F02_BE488670Ld10P005F04P005F101F1_006.ab1    12 
  212  C MoSU022R_F02_BE488670Ld10P005F04P005F101R1_006.ab1   661 
  216    MoSU022F_F02_BE488670Ld10P005F04P005F101F1_006.ab1    64 
  824  C MoSU022R_F02_BE488670Ld10P005F04P005F101R1_006.ab1    49 
  832    MoSU022F_F02_BE488670Ld10P005F04P005F101F1_006.ab1   680 
  856  C MoSU022R_F02_BE488670Ld10P005F04P005F101R1_006.ab1    18 
  864    MoSU022F_F02_BE488670Ld10P005F04P005F101F1_006.ab1   712 
Contig length: old 1002, new 1003

Contig length: old 1003, new 1003
New start: 0 
S Change at: 135; seg lengths: entry 1, contig 1