No. words: 1728; after pruning: 1688


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 13.4 (1,1:714)  679  0.42 0.00 0.14  MoSU022F_G02_BE488670Ld11P005F04P005F101F1_004.ab1        1   715 (147)  C MoSU022R_G02_BE488670Ld11P005F04P005F101R1_004.ab1   (152)   714     1 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  1       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  332 nodes

 168 str. conn. components

Path
    1  C MoSU022R_G02_BE488670Ld11P005F04P005F101R1_004.ab1   866 
  164    MoSU022F_G02_BE488670Ld11P005F04P005F101F1_004.ab1    12 
  212  C MoSU022R_G02_BE488670Ld11P005F04P005F101R1_004.ab1   655 
  216    MoSU022F_G02_BE488670Ld11P005F04P005F101F1_004.ab1    64 
  860  C MoSU022R_G02_BE488670Ld11P005F04P005F101R1_004.ab1     8 
  864    MoSU022F_G02_BE488670Ld11P005F04P005F101F1_004.ab1   712 
Contig length: old 1013, new 1014

Contig length: old 1014, new 1014
New start: 0 
S Change at: 135; seg lengths: entry 1, contig 1