No. words: 1697; after pruning: 1671


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    2    0.0 12.7 (1,1:718)  692  0.14 0.00 0.00  MoSU022F_H02_BE488670Ld12P005F04P005F101F1_002.ab1        1   717 (138)  C MoSU022R_H02_BE488670Ld12P005F04P005F101R1_002.ab1   (123)   719     3 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 2       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  352 nodes

 178 str. conn. components

Path
    1  C MoSU022R_H02_BE488670Ld12P005F04P005F101R1_002.ab1   842 
  135    MoSU022F_H02_BE488670Ld12P005F04P005F101F1_002.ab1    12 
  825  C MoSU022R_H02_BE488670Ld12P005F04P005F101R1_002.ab1    18 
  837    MoSU022F_H02_BE488670Ld12P005F04P005F101F1_002.ab1   714 
Contig length: old 978, new 978

Contig length: old 978, new 978
New start: 0