No. words: 1451; after pruning: 1425


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    2    0.0 12.8 (1,1:705)  674  0.00 0.00 0.14  MoSU022F_B01_BE488670Tu02P005F04P005F101F1_013.ab1        1   704 (26)  C MoSU022R_B01_BE488670Tu02P005F04P005F101R1_013.ab1   (16)   705     3 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 2       1        0

Offset
  1       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  346 nodes

 175 str. conn. components

Path
    1  C MoSU022R_B01_BE488670Tu02P005F04P005F101R1_013.ab1   721 
   28    MoSU022F_B01_BE488670Tu02P005F04P005F101F1_013.ab1    12 
   40  C MoSU022R_B01_BE488670Tu02P005F04P005F101R1_013.ab1   682 
   64    MoSU022F_B01_BE488670Tu02P005F04P005F101F1_013.ab1    48 
   68  C MoSU022R_B01_BE488670Tu02P005F04P005F101R1_013.ab1   654 
   80    MoSU022F_B01_BE488670Tu02P005F04P005F101F1_013.ab1    64 
   84  C MoSU022R_B01_BE488670Tu02P005F04P005F101R1_013.ab1   638 
   92    MoSU022F_B01_BE488670Tu02P005F04P005F101F1_013.ab1    76 
  100  C MoSU022R_B01_BE488670Tu02P005F04P005F101R1_013.ab1   622 
  120    MoSU022F_B01_BE488670Tu02P005F04P005F101F1_013.ab1   104 
  132  C MoSU022R_B01_BE488670Tu02P005F04P005F101R1_013.ab1   590 
  136    MoSU022F_B01_BE488670Tu02P005F04P005F101F1_013.ab1   120 
  156  C MoSU022R_B01_BE488670Tu02P005F04P005F101R1_013.ab1   566 
  164    MoSU022F_B01_BE488670Tu02P005F04P005F101F1_013.ab1   148 
Contig length: old 745, new 746

Contig length: old 746, new 746
New start: 0