No. words: 1328; after pruning: 1302


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 8.8 (1,1:584)  521  2.07 0.00 0.35  MoSU023F_H09_BE490007Ld02P019G02P019G081F1_065.ab1        1   579 (0)  C MoSU023R_H09_BE490007Ld02P019G02P019G081R1_065.ab1   (165)   584     8 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  1       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  252 nodes

 128 str. conn. components

Path
    1  C MoSU023R_H09_BE490007Ld02P019G02P019G081R1_065.ab1   749 
Contig length: old 749, new 749

Contig length: old 749, new 750
New start: 0 
I Change at: 723; seg lengths: entry 1, contig 0