No. words: 1227; after pruning: 1187


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 9.2 (1,1:550)  436  1.47 0.00 0.42  MoSU023F_C10_BE490007Ld05P019G02P019G081F1_076.ab1        1   476 (0)  C MoSU023R_C10_BE490007Ld05P019G02P019G081R1_076.ab1   (201)   550    77 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  1       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  216 nodes

 110 str. conn. components

Path
    1  C MoSU023R_C10_BE490007Ld05P019G02P019G081R1_076.ab1   751 
Contig length: old 751, new 751

Contig length: old 751, new 751
New start: 0 
S Change at: 115; seg lengths: entry 1, contig 1