No. words: 1413; after pruning: 1387


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 13.3 (1,1:811)  586  0.17 0.00 0.00  MoSU010F_E05_BE490219At01P018H01P018H071F1_039.ab1       59   659 (0)  C MoSU010R_E05_BE490219At01P018H01P018H071R1_039.ab1   (0)   754   154 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  300 nodes

 152 str. conn. components

Path
    1    MoSU010F_E05_BE490219At01P018H01P018H071F1_039.ab1     1 
  183  C MoSU010R_E05_BE490219At01P018H01P018H071R1_039.ab1   630 
  195    MoSU010F_E05_BE490219At01P018H01P018H071F1_039.ab1   195 
  215  C MoSU010R_E05_BE490219At01P018H01P018H071R1_039.ab1   598 
  219    MoSU010F_E05_BE490219At01P018H01P018H071F1_039.ab1   219 
  227  C MoSU010R_E05_BE490219At01P018H01P018H071R1_039.ab1   586 
  231    MoSU010F_E05_BE490219At01P018H01P018H071F1_039.ab1   231 
  247  C MoSU010R_E05_BE490219At01P018H01P018H071R1_039.ab1   566 
Contig length: old 812, new 812

Contig length: old 812, new 812
New start: 0