No. words: 1379; after pruning: 1353


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 8.4 (1,1:854)  503  0.00 0.00 0.38  MoSU005F_F01_BE490219At02P015G01G071F1_011.ab1      172   695 (0)  C MoSU005R_F01_BE490219At02P015G01G071R1_011.ab1   (0)   684   163 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  256 nodes

 130 str. conn. components

Path
    1    MoSU005F_F01_BE490219At02P015G01G071F1_011.ab1     1 
  503  C MoSU005R_F01_BE490219At02P015G01G071R1_011.ab1   353 
  511    MoSU005F_F01_BE490219At02P015G01G071F1_011.ab1   511 
  519  C MoSU005R_F01_BE490219At02P015G01G071R1_011.ab1   337 
  523    MoSU005F_F01_BE490219At02P015G01G071F1_011.ab1   523 
  527  C MoSU005R_F01_BE490219At02P015G01G071R1_011.ab1   329 
  539    MoSU005F_F01_BE490219At02P015G01G071F1_011.ab1   539 
  551  C MoSU005R_F01_BE490219At02P015G01G071R1_011.ab1   305 
  581    MoSU005F_F01_BE490219At02P015G01G071F1_011.ab1   582 
  585  C MoSU005R_F01_BE490219At02P015G01G071R1_011.ab1   271 
Contig length: old 855, new 855

Contig length: old 855, new 855
New start: 0