No. words: 1365; after pruning: 1339


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 11.7 (1,1:833)  516  0.19 0.00 0.00  MoSU010F_F05_BE490219At02P018H01P018H071F1_037.ab1      139   669 (0)  C MoSU010R_F05_BE490219At02P018H01P018H071R1_037.ab1   (0)   696   166 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  260 nodes

 132 str. conn. components

Path
    1    MoSU010F_F05_BE490219At02P018H01P018H071F1_037.ab1     1 
  204  C MoSU010R_F05_BE490219At02P018H01P018H071R1_037.ab1   631 
  208    MoSU010F_F05_BE490219At02P018H01P018H071F1_037.ab1   208 
  228  C MoSU010R_F05_BE490219At02P018H01P018H071R1_037.ab1   607 
  236    MoSU010F_F05_BE490219At02P018H01P018H071F1_037.ab1   236 
  264  C MoSU010R_F05_BE490219At02P018H01P018H071R1_037.ab1   571 
  268    MoSU010F_F05_BE490219At02P018H01P018H071F1_037.ab1   268 
  272  C MoSU010R_F05_BE490219At02P018H01P018H071R1_037.ab1   563 
  276    MoSU010F_F05_BE490219At02P018H01P018H071F1_037.ab1   276 
  300  C MoSU010R_F05_BE490219At02P018H01P018H071R1_037.ab1   535 
  316    MoSU010F_F05_BE490219At02P018H01P018H071F1_037.ab1   316 
  320  C MoSU010R_F05_BE490219At02P018H01P018H071R1_037.ab1   515 
  332    MoSU010F_F05_BE490219At02P018H01P018H071F1_037.ab1   332 
  336  C MoSU010R_F05_BE490219At02P018H01P018H071R1_037.ab1   499 
Contig length: old 834, new 834

Contig length: old 834, new 834
New start: 0