No. words: 1565; after pruning: 1525


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 13.6 (1,1:860)  671  0.57 0.00 0.14  MoSU005F_G01_BE490219Ld01P015G01G071F1_004.ab1       75   778 (0)  C MoSU005R_G01_BE490219Ld01P015G01G071R1_004.ab1   (0)   787    85 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  340 nodes

 172 str. conn. components

Path
    1    MoSU005F_G01_BE490219Ld01P015G01G071F1_004.ab1     1 
  363  C MoSU005R_G01_BE490219Ld01P015G01G071R1_004.ab1   500 
  367    MoSU005F_G01_BE490219Ld01P015G01G071F1_004.ab1   367 
  403  C MoSU005R_G01_BE490219Ld01P015G01G071R1_004.ab1   460 
  407    MoSU005F_G01_BE490219Ld01P015G01G071F1_004.ab1   407 
  411  C MoSU005R_G01_BE490219Ld01P015G01G071R1_004.ab1   452 
  423    MoSU005F_G01_BE490219Ld01P015G01G071F1_004.ab1   423 
  443  C MoSU005R_G01_BE490219Ld01P015G01G071R1_004.ab1   420 
  459    MoSU005F_G01_BE490219Ld01P015G01G071F1_004.ab1   459 
  463  C MoSU005R_G01_BE490219Ld01P015G01G071R1_004.ab1   400 
  475    MoSU005F_G01_BE490219Ld01P015G01G071F1_004.ab1   475 
  479  C MoSU005R_G01_BE490219Ld01P015G01G071R1_004.ab1   384 
  483    MoSU005F_G01_BE490219Ld01P015G01G071F1_004.ab1   483 
  491  C MoSU005R_G01_BE490219Ld01P015G01G071R1_004.ab1   372 
Contig length: old 861, new 862

Contig length: old 862, new 862
New start: 0