No. words: 1524; after pruning: 1498


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 13.7 (1,1:868)  615  0.76 0.00 0.30  MoSU005F_A02_BE490219Ld03P015G01G071F1_005.ab1      123   778 (0)  C MoSU005R_A02_BE490219Ld03P015G01G071R1_005.ab1   (0)   746    93 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  1       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  312 nodes

 158 str. conn. components

Path
    1    MoSU005F_A02_BE490219Ld03P015G01G071F1_005.ab1     1 
  354  C MoSU005R_A02_BE490219Ld03P015G01G071R1_005.ab1   516 
  358    MoSU005F_A02_BE490219Ld03P015G01G071F1_005.ab1   358 
  382  C MoSU005R_A02_BE490219Ld03P015G01G071R1_005.ab1   488 
  390    MoSU005F_A02_BE490219Ld03P015G01G071F1_005.ab1   390 
  430  C MoSU005R_A02_BE490219Ld03P015G01G071R1_005.ab1   440 
  446    MoSU005F_A02_BE490219Ld03P015G01G071F1_005.ab1   446 
  450  C MoSU005R_A02_BE490219Ld03P015G01G071R1_005.ab1   420 
  454    MoSU005F_A02_BE490219Ld03P015G01G071F1_005.ab1   454 
  458  C MoSU005R_A02_BE490219Ld03P015G01G071R1_005.ab1   412 
  490    MoSU005F_A02_BE490219Ld03P015G01G071F1_005.ab1   490 
  502  C MoSU005R_A02_BE490219Ld03P015G01G071R1_005.ab1   368 
  522    MoSU005F_A02_BE490219Ld03P015G01G071F1_005.ab1   522 
  526  C MoSU005R_A02_BE490219Ld03P015G01G071R1_005.ab1   344 
Contig length: old 869, new 869

Contig length: old 869, new 869
New start: 0