No. words: 1663; after pruning: 1637


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    2    0.0 17.1 (1,1:829)  788  0.49 0.00 0.00  MoSU010F_B06_BE490219Ld04P018H01P018H071F1_046.ab1        1   822 (2)  C MoSU010R_B06_BE490219Ld04P018H01P018H071R1_046.ab1   (9)   830     9 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 2       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  402 nodes

 203 str. conn. components

Path
    1  C MoSU010R_B06_BE490219Ld04P018H01P018H071R1_046.ab1   839 
   13    MoSU010F_B06_BE490219Ld04P018H01P018H071F1_046.ab1     4 
   17  C MoSU010R_B06_BE490219Ld04P018H01P018H071R1_046.ab1   823 
   29    MoSU010F_B06_BE490219Ld04P018H01P018H071F1_046.ab1    20 
   41  C MoSU010R_B06_BE490219Ld04P018H01P018H071R1_046.ab1   799 
   66    MoSU010F_B06_BE490219Ld04P018H01P018H071F1_046.ab1    57 
   82  C MoSU010R_B06_BE490219Ld04P018H01P018H071R1_046.ab1   758 
  104    MoSU010F_B06_BE490219Ld04P018H01P018H071F1_046.ab1    95 
  168  C MoSU010R_B06_BE490219Ld04P018H01P018H071R1_046.ab1   672 
  172    MoSU010F_B06_BE490219Ld04P018H01P018H071F1_046.ab1   163 
  184  C MoSU010R_B06_BE490219Ld04P018H01P018H071R1_046.ab1   656 
  200    MoSU010F_B06_BE490219Ld04P018H01P018H071F1_046.ab1   191 
  224  C MoSU010R_B06_BE490219Ld04P018H01P018H071R1_046.ab1   616 
  228    MoSU010F_B06_BE490219Ld04P018H01P018H071F1_046.ab1   219 
  232  C MoSU010R_B06_BE490219Ld04P018H01P018H071R1_046.ab1   608 
  268    MoSU010F_B06_BE490219Ld04P018H01P018H071F1_046.ab1   259 
  272  C MoSU010R_B06_BE490219Ld04P018H01P018H071R1_046.ab1   568 
  308    MoSU010F_B06_BE490219Ld04P018H01P018H071F1_046.ab1   299 
  324  C MoSU010R_B06_BE490219Ld04P018H01P018H071R1_046.ab1   516 
  356    MoSU010F_B06_BE490219Ld04P018H01P018H071F1_046.ab1   347 
  360  C MoSU010R_B06_BE490219Ld04P018H01P018H071R1_046.ab1   480 
  392    MoSU010F_B06_BE490219Ld04P018H01P018H071F1_046.ab1   383 
  396  C MoSU010R_B06_BE490219Ld04P018H01P018H071R1_046.ab1   444 
  444    MoSU010F_B06_BE490219Ld04P018H01P018H071F1_046.ab1   435 
  448  C MoSU010R_B06_BE490219Ld04P018H01P018H071R1_046.ab1   392 
  476    MoSU010F_B06_BE490219Ld04P018H01P018H071F1_046.ab1   467 
  484  C MoSU010R_B06_BE490219Ld04P018H01P018H071R1_046.ab1   356 
  824    MoSU010F_B06_BE490219Ld04P018H01P018H071F1_046.ab1   815 
  828  C MoSU010R_B06_BE490219Ld04P018H01P018H071R1_046.ab1    12 
Contig length: old 839, new 839

Contig length: old 839, new 839
New start: 0