No. words: 1452; after pruning: 1426


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 13.0 (1,1:860)  572  0.17 0.00 0.00  MoSU005F_C02_BE490219Ld05P015G01G071F1_006.ab1      143   733 (0)  C MoSU005R_C02_BE490219Ld05P015G01G071R1_006.ab1   (0)   719   129 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  294 nodes

 149 str. conn. components

Path
    1    MoSU005F_C02_BE490219Ld05P015G01G071F1_006.ab1     1 
  378  C MoSU005R_C02_BE490219Ld05P015G01G071R1_006.ab1   484 
  390    MoSU005F_C02_BE490219Ld05P015G01G071F1_006.ab1   390 
  432  C MoSU005R_C02_BE490219Ld05P015G01G071R1_006.ab1   430 
  436    MoSU005F_C02_BE490219Ld05P015G01G071F1_006.ab1   436 
  476  C MoSU005R_C02_BE490219Ld05P015G01G071R1_006.ab1   386 
  484    MoSU005F_C02_BE490219Ld05P015G01G071F1_006.ab1   484 
  488  C MoSU005R_C02_BE490219Ld05P015G01G071R1_006.ab1   374 
  492    MoSU005F_C02_BE490219Ld05P015G01G071F1_006.ab1   492 
  496  C MoSU005R_C02_BE490219Ld05P015G01G071R1_006.ab1   366 
Contig length: old 861, new 861

Contig length: old 861, new 861
New start: 0