No. words: 1583; after pruning: 1557


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 16.5 (1,1:829)  728  0.00 0.13 0.00  MoSU010F_C06_BE490219Ld05P018H01P018H071F1_044.ab1        9   760 (0)  C MoSU010R_C06_BE490219Ld05P018H01P018H071R1_044.ab1   (0)   823    71 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  376 nodes

 190 str. conn. components

Path
    1    MoSU010F_C06_BE490219Ld05P018H01P018H071F1_044.ab1     1 
   12  C MoSU010R_C06_BE490219Ld05P018H01P018H071R1_044.ab1   820 
   22    MoSU010F_C06_BE490219Ld05P018H01P018H071F1_044.ab1    21 
  246  C MoSU010R_C06_BE490219Ld05P018H01P018H071R1_044.ab1   586 
  250    MoSU010F_C06_BE490219Ld05P018H01P018H071F1_044.ab1   249 
  270  C MoSU010R_C06_BE490219Ld05P018H01P018H071R1_044.ab1   562 
  298    MoSU010F_C06_BE490219Ld05P018H01P018H071F1_044.ab1   297 
  302  C MoSU010R_C06_BE490219Ld05P018H01P018H071R1_044.ab1   530 
  350    MoSU010F_C06_BE490219Ld05P018H01P018H071F1_044.ab1   349 
  354  C MoSU010R_C06_BE490219Ld05P018H01P018H071R1_044.ab1   478 
  382    MoSU010F_C06_BE490219Ld05P018H01P018H071F1_044.ab1   381 
  390  C MoSU010R_C06_BE490219Ld05P018H01P018H071R1_044.ab1   442 
  466    MoSU010F_C06_BE490219Ld05P018H01P018H071F1_044.ab1   465 
  474  C MoSU010R_C06_BE490219Ld05P018H01P018H071R1_044.ab1   358 
  490    MoSU010F_C06_BE490219Ld05P018H01P018H071F1_044.ab1   489 
  498  C MoSU010R_C06_BE490219Ld05P018H01P018H071R1_044.ab1   334 
  518    MoSU010F_C06_BE490219Ld05P018H01P018H071F1_044.ab1   517 
  522  C MoSU010R_C06_BE490219Ld05P018H01P018H071R1_044.ab1   310 
Contig length: old 830, new 831

Contig length: old 831, new 831
New start: 0