No. words: 1559; after pruning: 1533


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    4    0.0 10.0 (1,1:1073)  469  0.21 0.00 0.00  MoSU005F_E02_BE490219Ld07P015G01G071F1_007.ab1      297   777 (4)  C MoSU005R_E02_BE490219Ld07P015G01G071R1_007.ab1   (0)   778   298 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 4       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  238 nodes

 121 str. conn. components

Path
    1    MoSU005F_E02_BE490219Ld07P015G01G071F1_007.ab1     1 
  527  C MoSU005R_E02_BE490219Ld07P015G01G071R1_007.ab1   548 
  551    MoSU005F_E02_BE490219Ld07P015G01G071F1_007.ab1   551 
  555  C MoSU005R_E02_BE490219Ld07P015G01G071R1_007.ab1   520 
Contig length: old 1074, new 1074

Contig length: old 1074, new 1074
New start: 0