No. words: 1276; after pruning: 1250


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 13.6 (1,1:622)  596  0.00 0.00 0.00  MoSU033F_D06_BE490219Ta20P024E10P015G071F1_042.ab1        1   613 (0)  C MoSU033R_D06_BE490219Ta20P024E10P015G071R1_042.ab1   (40)   623    11 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  308 nodes

 156 str. conn. components

Path
    1  C MoSU033R_D06_BE490219Ta20P024E10P015G071R1_042.ab1   663 
  192    MoSU033F_D06_BE490219Ta20P024E10P015G071F1_042.ab1   152 
  204  C MoSU033R_D06_BE490219Ta20P024E10P015G071R1_042.ab1   460 
  244    MoSU033F_D06_BE490219Ta20P024E10P015G071F1_042.ab1   204 
  284  C MoSU033R_D06_BE490219Ta20P024E10P015G071R1_042.ab1   380 
  352    MoSU033F_D06_BE490219Ta20P024E10P015G071F1_042.ab1   312 
  356  C MoSU033R_D06_BE490219Ta20P024E10P015G071R1_042.ab1   308 
  364    MoSU033F_D06_BE490219Ta20P024E10P015G071F1_042.ab1   324 
  412  C MoSU033R_D06_BE490219Ta20P024E10P015G071R1_042.ab1   252 
  488    MoSU033F_D06_BE490219Ta20P024E10P015G071F1_042.ab1   448 
  500  C MoSU033R_D06_BE490219Ta20P024E10P015G071R1_042.ab1   164 
  504    MoSU033F_D06_BE490219Ta20P024E10P015G071F1_042.ab1   464 
  512  C MoSU033R_D06_BE490219Ta20P024E10P015G071R1_042.ab1   152 
Contig length: old 663, new 663

Contig length: old 663, new 663
New start: 0