No. words: 1097; after pruning: 1043


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 8.2 (1,1:510)  473  0.39 0.98 0.00  MoSU033F_E03_BE490219Ta21P024C10P015G071F1_023.ab1        1   510 (35)  C MoSU033R_E03_BE490219Ta21P024C10P015G071R1_023.ab1   (37)   515     1 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  238 nodes

 121 str. conn. components

Path
    1  C MoSU033R_E03_BE490219Ta21P024C10P015G071R1_023.ab1   552 
   85    MoSU033F_E03_BE490219Ta21P024C10P015G071F1_023.ab1    43 
  128  C MoSU033R_E03_BE490219Ta21P024C10P015G071R1_023.ab1   425 
  148    MoSU033F_E03_BE490219Ta21P024C10P015G071F1_023.ab1   106 
  318  C MoSU033R_E03_BE490219Ta21P024C10P015G071R1_023.ab1   235 
  390    MoSU033F_E03_BE490219Ta21P024C10P015G071F1_023.ab1   348 
  398  C MoSU033R_E03_BE490219Ta21P024C10P015G071R1_023.ab1   155 
  402    MoSU033F_E03_BE490219Ta21P024C10P015G071F1_023.ab1   360 
  406  C MoSU033R_E03_BE490219Ta21P024C10P015G071R1_023.ab1   147 
  466    MoSU033F_E03_BE490219Ta21P024C10P015G071F1_023.ab1   424 
  470  C MoSU033R_E03_BE490219Ta21P024C10P015G071R1_023.ab1    83 
  474    MoSU033F_E03_BE490219Ta21P024C10P015G071F1_023.ab1   432 
  478  C MoSU033R_E03_BE490219Ta21P024C10P015G071R1_023.ab1    75 
  502    MoSU033F_E03_BE490219Ta21P024C10P015G071F1_023.ab1   460 
  506  C MoSU033R_E03_BE490219Ta21P024C10P015G071R1_023.ab1    47 
  514    MoSU033F_E03_BE490219Ta21P024C10P015G071F1_023.ab1   472 
  538  C MoSU033R_E03_BE490219Ta21P024C10P015G071R1_023.ab1    15 
  546    MoSU033F_E03_BE490219Ta21P024C10P015G071F1_023.ab1   504 
Contig length: old 586, new 587

Contig length: old 587, new 587
New start: 0