No. words: 1499; after pruning: 1459


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 15.8 (1,1:719)  698  0.28 0.00 0.00  MoSU033F_C11_BE490219Ta21P024F10P015G071F1_091.ab1        1   720 (39)  C MoSU033R_C11_BE490219Ta21P024F10P015G071R1_091.ab1   (20)   720     1 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  354 nodes

 179 str. conn. components

Path
    1  C MoSU033R_C11_BE490219Ta21P024F10P015G071R1_091.ab1   740 
   32    MoSU033F_C11_BE490219Ta21P024F10P015G071F1_091.ab1    12 
  100  C MoSU033R_C11_BE490219Ta21P024F10P015G071R1_091.ab1   641 
  104    MoSU033F_C11_BE490219Ta21P024F10P015G071F1_091.ab1    84 
  166  C MoSU033R_C11_BE490219Ta21P024F10P015G071R1_091.ab1   575 
  174    MoSU033F_C11_BE490219Ta21P024F10P015G071F1_091.ab1   154 
  242  C MoSU033R_C11_BE490219Ta21P024F10P015G071R1_091.ab1   499 
  258    MoSU033F_C11_BE490219Ta21P024F10P015G071F1_091.ab1   238 
  306  C MoSU033R_C11_BE490219Ta21P024F10P015G071R1_091.ab1   435 
  322    MoSU033F_C11_BE490219Ta21P024F10P015G071F1_091.ab1   302 
  442  C MoSU033R_C11_BE490219Ta21P024F10P015G071R1_091.ab1   299 
  446    MoSU033F_C11_BE490219Ta21P024F10P015G071F1_091.ab1   426 
  466  C MoSU033R_C11_BE490219Ta21P024F10P015G071R1_091.ab1   275 
  502    MoSU033F_C11_BE490219Ta21P024F10P015G071F1_091.ab1   482 
  506  C MoSU033R_C11_BE490219Ta21P024F10P015G071R1_091.ab1   235 
  570    MoSU033F_C11_BE490219Ta21P024F10P015G071F1_091.ab1   550 
  590  C MoSU033R_C11_BE490219Ta21P024F10P015G071R1_091.ab1   151 
  610    MoSU033F_C11_BE490219Ta21P024F10P015G071F1_091.ab1   590 
  614  C MoSU033R_C11_BE490219Ta21P024F10P015G071R1_091.ab1   127 
  630    MoSU033F_C11_BE490219Ta21P024F10P015G071F1_091.ab1   610 
  634  C MoSU033R_C11_BE490219Ta21P024F10P015G071R1_091.ab1   107 
  702    MoSU033F_C11_BE490219Ta21P024F10P015G071F1_091.ab1   682 
  714  C MoSU033R_C11_BE490219Ta21P024F10P015G071R1_091.ab1    27 
  734    MoSU033F_C11_BE490219Ta21P024F10P015G071F1_091.ab1   714 
Contig length: old 779, new 779

Contig length: old 779, new 779
New start: 0 
S Change at: 24; seg lengths: entry 1, contig 1