No. words: 1512; after pruning: 1486


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    1    0.0 15.6 (1,1:731)  706  0.14 0.14 0.00  MoSU033F_F11_BE490219Ta24P024F10P015G071F1_085.ab1        1   731 (40)  C MoSU033R_F11_BE490219Ta24P024F10P015G071R1_085.ab1   (8)   733     2 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 1       1        0

Offset
  1       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  360 nodes

 182 str. conn. components

Path
    1  C MoSU033R_F11_BE490219Ta24P024F10P015G071R1_085.ab1   741 
   36    MoSU033F_F11_BE490219Ta24P024F10P015G071F1_085.ab1    27 
   56  C MoSU033R_F11_BE490219Ta24P024F10P015G071R1_085.ab1   686 
   60    MoSU033F_F11_BE490219Ta24P024F10P015G071F1_085.ab1    51 
  164  C MoSU033R_F11_BE490219Ta24P024F10P015G071R1_085.ab1   578 
  232    MoSU033F_F11_BE490219Ta24P024F10P015G071F1_085.ab1   223 
  304  C MoSU033R_F11_BE490219Ta24P024F10P015G071R1_085.ab1   438 
  324    MoSU033F_F11_BE490219Ta24P024F10P015G071F1_085.ab1   315 
  396  C MoSU033R_F11_BE490219Ta24P024F10P015G071R1_085.ab1   346 
  444    MoSU033F_F11_BE490219Ta24P024F10P015G071F1_085.ab1   435 
  468  C MoSU033R_F11_BE490219Ta24P024F10P015G071R1_085.ab1   274 
  584    MoSU033F_F11_BE490219Ta24P024F10P015G071F1_085.ab1   575 
  588  C MoSU033R_F11_BE490219Ta24P024F10P015G071R1_085.ab1   154 
  628    MoSU033F_F11_BE490219Ta24P024F10P015G071F1_085.ab1   619 
  632  C MoSU033R_F11_BE490219Ta24P024F10P015G071R1_085.ab1   110 
  688    MoSU033F_F11_BE490219Ta24P024F10P015G071F1_085.ab1   679 
  696  C MoSU033R_F11_BE490219Ta24P024F10P015G071R1_085.ab1    46 
  736    MoSU033F_F11_BE490219Ta24P024F10P015G071F1_085.ab1   727 
Contig length: old 780, new 780

Contig length: old 780, new 780
New start: 0 
S Change at: 24; seg lengths: entry 1, contig 1