No. words: 1097; after pruning: 1071


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    2    0.0 4.8 (1,1:505)  443  2.58 0.20 0.00  MoSU033F_A01_BE490219Td01P024C10P015G071F1_015.ab1        3   505 (38)  C MoSU033R_A01_BE490219Td01P024C10P015G071R1_015.ab1   (50)   504     1 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 2       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  210 nodes

 107 str. conn. components

Path
    1  C MoSU033R_A01_BE490219Td01P024C10P015G071R1_015.ab1   554 
   57    MoSU033F_A01_BE490219Td01P024C10P015G071F1_015.ab1     9 
  139  C MoSU033R_A01_BE490219Td01P024C10P015G071R1_015.ab1   415 
  143    MoSU033F_A01_BE490219Td01P024C10P015G071F1_015.ab1    95 
  215  C MoSU033R_A01_BE490219Td01P024C10P015G071R1_015.ab1   339 
  219    MoSU033F_A01_BE490219Td01P024C10P015G071F1_015.ab1   171 
  324  C MoSU033R_A01_BE490219Td01P024C10P015G071R1_015.ab1   230 
  328    MoSU033F_A01_BE490219Td01P024C10P015G071F1_015.ab1   280 
Contig length: old 591, new 591

Contig length: old 591, new 592
New start: 0 
I Change at: 83; seg lengths: entry 1, contig 0