No. words: 1313; after pruning: 1287


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 13.6 (1,1:612)  596  0.00 0.00 0.00  MoSU033F_B04_BE490219Td02P024E10P015G071F1_030.ab1        1   613 (40)  C MoSU033R_B04_BE490219Td02P024E10P015G071R1_030.ab1   (47)   613     1 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  308 nodes

 156 str. conn. components

Path
    1  C MoSU033R_B04_BE490219Td02P024E10P015G071R1_030.ab1   660 
  391    MoSU033F_B04_BE490219Td02P024E10P015G071F1_030.ab1   344 
  487  C MoSU033R_B04_BE490219Td02P024E10P015G071R1_030.ab1   174 
  503    MoSU033F_B04_BE490219Td02P024E10P015G071F1_030.ab1   456 
  607  C MoSU033R_B04_BE490219Td02P024E10P015G071R1_030.ab1    54 
  619    MoSU033F_B04_BE490219Td02P024E10P015G071F1_030.ab1   572 
Contig length: old 700, new 700

Contig length: old 700, new 700
New start: 0