No. words: 1097; after pruning: 1057


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 8.7 (1,1:504)  475  0.20 0.60 0.00  MoSU033F_C01_BE490219Td03P024C10P015G071F1_011.ab1        1   504 (51)  C MoSU033R_C01_BE490219Td03P024C10P015G071R1_011.ab1   (35)   507     1 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  242 nodes

 123 str. conn. components

Path
    1  C MoSU033R_C01_BE490219Td03P024C10P015G071R1_011.ab1   542 
  147    MoSU033F_C01_BE490219Td03P024C10P015G071F1_011.ab1   109 
  163  C MoSU033R_C01_BE490219Td03P024C10P015G071R1_011.ab1   380 
  167    MoSU033F_C01_BE490219Td03P024C10P015G071F1_011.ab1   129 
  308  C MoSU033R_C01_BE490219Td03P024C10P015G071R1_011.ab1   235 
  340    MoSU033F_C01_BE490219Td03P024C10P015G071F1_011.ab1   302 
  440  C MoSU033R_C01_BE490219Td03P024C10P015G071R1_011.ab1   103 
  484    MoSU033F_C01_BE490219Td03P024C10P015G071F1_011.ab1   446 
  488  C MoSU033R_C01_BE490219Td03P024C10P015G071R1_011.ab1    55 
  492    MoSU033F_C01_BE490219Td03P024C10P015G071F1_011.ab1   454 
Contig length: old 592, new 593

Contig length: old 593, new 593
New start: 0