No. words: 1328; after pruning: 1302


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 13.8 (1,1:622)  606  0.00 0.00 0.00  MoSU033F_C04_BE490219Td03P024E10P015G071F1_028.ab1        1   623 (43)  C MoSU033R_C04_BE490219Td03P024E10P015G071R1_028.ab1   (39)   623     1 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  312 nodes

 158 str. conn. components

Path
    1  C MoSU033R_C04_BE490219Td03P024E10P015G071R1_028.ab1   662 
  119    MoSU033F_C04_BE490219Td03P024E10P015G071F1_028.ab1    80 
  123  C MoSU033R_C04_BE490219Td03P024E10P015G071R1_028.ab1   540 
  183    MoSU033F_C04_BE490219Td03P024E10P015G071F1_028.ab1   144 
  187  C MoSU033R_C04_BE490219Td03P024E10P015G071R1_028.ab1   476 
  195    MoSU033F_C04_BE490219Td03P024E10P015G071F1_028.ab1   156 
  227  C MoSU033R_C04_BE490219Td03P024E10P015G071R1_028.ab1   436 
  279    MoSU033F_C04_BE490219Td03P024E10P015G071F1_028.ab1   240 
  315  C MoSU033R_C04_BE490219Td03P024E10P015G071R1_028.ab1   348 
  331    MoSU033F_C04_BE490219Td03P024E10P015G071F1_028.ab1   292 
  359  C MoSU033R_C04_BE490219Td03P024E10P015G071R1_028.ab1   304 
  403    MoSU033F_C04_BE490219Td03P024E10P015G071F1_028.ab1   364 
  431  C MoSU033R_C04_BE490219Td03P024E10P015G071R1_028.ab1   232 
  479    MoSU033F_C04_BE490219Td03P024E10P015G071F1_028.ab1   440 
  523  C MoSU033R_C04_BE490219Td03P024E10P015G071R1_028.ab1   140 
  539    MoSU033F_C04_BE490219Td03P024E10P015G071F1_028.ab1   500 
  543  C MoSU033R_C04_BE490219Td03P024E10P015G071R1_028.ab1   120 
  563    MoSU033F_C04_BE490219Td03P024E10P015G071F1_028.ab1   524 
  567  C MoSU033R_C04_BE490219Td03P024E10P015G071R1_028.ab1    96 
  571    MoSU033F_C04_BE490219Td03P024E10P015G071F1_028.ab1   532 
  583  C MoSU033R_C04_BE490219Td03P024E10P015G071R1_028.ab1    80 
  603    MoSU033F_C04_BE490219Td03P024E10P015G071F1_028.ab1   564 
  607  C MoSU033R_C04_BE490219Td03P024E10P015G071R1_028.ab1    56 
  611    MoSU033F_C04_BE490219Td03P024E10P015G071F1_028.ab1   572 
  623  C MoSU033R_C04_BE490219Td03P024E10P015G071R1_028.ab1    40 
  627    MoSU033F_C04_BE490219Td03P024E10P015G071F1_028.ab1   588 
Contig length: old 705, new 705

Contig length: old 705, new 705
New start: 0